#!/bin/bash
# bash script to compile latex document putting aux files in a hidden directory

	# Store absolute location of current working directory 
dolatex_cwd=$(pwd)
	# Create directory if it doesn't exist
if [ ! -d ".metafiles" ]; then
  mkdir .metafiles
fi
	# Run pdflatex and bibtex with hidden directoy .metafiles as in-/output directories
	# l'argument en var $1 ne doit pas avoir d'extension pour la compilation bibtex
texfot texliveonfly --compiler=pdflatex --arguments='-output-directory=.metafiles --file-line-error-style -synctex=1 --shell-escape' $1.tex
	# change directory to the one of the metafiles for bibtex compilation
cd .metafiles
bibtex -terse $1.aux 
	# return to work directory
cd "$dolatex_cwd"
texfot texliveonfly --compiler=pdflatex --arguments='-output-directory=.metafiles --file-line-error-style -synctex=1 --shell-escape' $1.tex
texfot texliveonfly --compiler=pdflatex --arguments='-output-directory=.metafiles --file-line-error-style -synctex=1 --shell-escape' $1.tex
	# move the output PDF
mv "./.metafiles/$1.pdf" "$1.pdf"
mv "./.metafiles/$1.synctex.gz" "$1.synctex.gz"